Package: VCFArrow
Title: Fast and Memory-Efficient Manipulation and Conversion of VCF
        Files
Version: 0.9.0
Authors@R: 
    person("Tomas", "Hrbek", , "hrbek@evoamazon.net", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0003-3239-7068"))
Description: Reads Variant Call Format (VCF) files into an S4 object
        whose genotypes are stored on disk as an 'Apache Arrow' dataset
        and loaded lazily, allowing large datasets to be processed with
        little memory. Provides functions to filter variants and
        samples, subset and merge datasets, compute summary statistics
        and diagnostic plots, write VCF files, and convert data to
        input formats of population genetic and phylogenetic software
        such as 'STRUCTURE', 'ADMIXTURE', 'PLINK', 'EIGENSTRAT',
        'Arlequin', 'GENEPOP', 'BayeScan', 'TreeMix', 'SNAPP' and
        'adegenet'.
URL: https://legallab.github.io/VCFArrow/,
        https://github.com/legalLab/VCFArrow
BugReports: https://github.com/legalLab/VCFArrow/issues
Language: en-US
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.1.0)
LinkingTo: Rcpp
Imports: Rcpp, arrow, cli, dplyr, ggplot2, methods, parallel, stats,
        stringr, tibble, utils, vctrs
Suggests: adegenet, knitr, rmarkdown, svglite
VignetteBuilder: knitr
SystemRequirements: zlib
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: cmake libicu-dev libssl-dev zlib1g-dev
Repository: https://legallab.r-universe.dev
Date/Publication: 2026-10-07 03:11:09 UTC
RemoteUrl: https://github.com/legallab/vcfarrow
RemoteRef: HEAD
RemoteSha: 922263f7f2247d90da107fb292d4a1b826d7ddfa
NeedsCompilation: yes
Packaged: 2026-10-17 09:47:02 UTC; root
Author: Tomas Hrbek [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-3239-7068>)
Maintainer: Tomas Hrbek <hrbek@evoamazon.net>